| Basic Information | |
|---|---|
| Taxon OID | 3300012346 Open in IMG/M |
| Scaffold ID | Ga0157141_1003797 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2602 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kawartha Lake, Ontario | |||||||
| Coordinates | Lat. (o) | 44.46181 | Long. (o) | -78.6228 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021092 | Metagenome / Metatranscriptome | 220 | N |
| F023325 | Metagenome / Metatranscriptome | 210 | N |
| F026511 | Metagenome / Metatranscriptome | 197 | N |
| F052474 | Metagenome / Metatranscriptome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157141_10037972 | F023325 | AGTAG | MRLISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNATIGQQYYLQPDEVLDSQNNFITTIELVDSVTNATAPTVPTTDPLSATQASQGYLYICNTKREILATLPLYTLIRRLQAGKPQYLYFDEPVVWQNCFIQFESLGSAITTANSVWLKVSYSPIDK* |
| Ga0157141_10037973 | F021092 | N/A | MTDPHYILEYMSENDLRYFQVANNFNRDVVSSFNDRSLEEGIDKMRKFLSKNTGFHRIKLYLRANGVPKQEPQIFEVSITGKEFDPPKEDTNISGFGVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELEIQYLRDQHNREIERLRSDHEAALKAAKDSNQMFSQGLGMLMQRMGVGE* |
| Ga0157141_10037974 | F052474 | N/A | VNNTILNIMTDKEKILAAINKLAKFDANLADNLTKLAELAEKNTFVYDQAVKQLKSL* |
| Ga0157141_10037979 | F026511 | N/A | MNTTTEIQYVGEATMITSDCIAIAFNRPTGSNPVNINGYPLAEGQTLRISQNVGDIDRTQYQIYFGSGSGADECYVFRTLILDSYHNG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |