| Basic Information | |
|---|---|
| Taxon OID | 3300012346 Open in IMG/M |
| Scaffold ID | Ga0157141_1000511 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11420 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (18.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kawartha Lake, Ontario | |||||||
| Coordinates | Lat. (o) | 44.46181 | Long. (o) | -78.6228 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F029754 | Metagenome / Metatranscriptome | 187 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157141_100051112 | F001298 | N/A | MSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYCERTQYTVRLPAVTASWSLPDGSTGASAATLSSGAPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ* |
| Ga0157141_10005112 | F029754 | N/A | MSCNTVTFKRGSSFAASVDYTPETGGIPDLDGVTVTSTIIDAERNEYDLTVVVAGDGLSFTATYVGSTADWAIGTARWDIRFQNNDSVFYSETMRLDIIGQVTA* |
| Ga0157141_10005119 | F001055 | N/A | MGTKSIRHIVESTLVIYLSTQTGLTSVQFLTGDSAVTQTLPKAVVLCDSARAPGDLPEGLGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIQAAFVSSTDATCYDVTMTSEDEGIDERSWATAFAFDVLVVLPAA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |