NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157139_1004139

Scaffold Ga0157139_1004139


Overview

Basic Information
Taxon OID3300012345 Open in IMG/M
Scaffold IDGa0157139_1004139 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Burnt River, Ontario, Canada - S22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)778
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lakes, Ontario
CoordinatesLat. (o)44.74057Long. (o)-78.6591Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024312Metagenome206N
F038998Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0157139_10041391F038998N/AMIVLNICKEEINWKEAKNGKSYANVATDFLKQPDDKGNTHTVWNNQSPEERAEKAKKNYCGRGKQVSYNAPAAKKEFAVNQQESEDDLPF*
Ga0157139_10041392F024312N/AMTPLSKLWDLREEVKFWNYKFDTSYTHNAREILDKLNKAKEELKNHKLKYFPELLDQPKRNYIPYEMLTDKFEVFENYLND*

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