NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137459_1015911

Scaffold Ga0137459_1015911


Overview

Basic Information
Taxon OID3300012228 Open in IMG/M
Scaffold IDGa0137459_1015911 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2093
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9775Long. (o)-107.0029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099529Metagenome103Y
F104921Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0137459_10159112F099529GGAGMNTFEILVRIVLALLILYILWHGYVVVVAYRWKQEDKLISRALAPRDEVL*
Ga0137459_10159113F104921AGGAGGMTEPNNNTLIIKPEIVAPPSVSNLSVAQVGTGMFSVTMQVIMVVRFPTDAPAGVPMVISTDNAVPQTPVIASTTVQAATGELMYGNGELPNAFDGEAEGFQAFMQVHGYVPPTREMLIQWATNSQGGA*

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