| Basic Information | |
|---|---|
| Taxon OID | 3300012157 Open in IMG/M |
| Scaffold ID | Ga0137353_1000042 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26303 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (72.22%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9227 | Long. (o) | -106.9515 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019245 | Metagenome | 231 | Y |
| F023611 | Metagenome / Metatranscriptome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0137353_100004234 | F019245 | AGGA | MQTKIAKFTFSVPEGHPEAGKKVEKTFEYSVCDNQTEAETIITDKKWSVVGMVNDILKANSRSNAYQAALLPYRPSEVSEEDIVERMVRDYIRLGFPEDVARKQIQALRAATAVVPETDSQEPPADSN* |
| Ga0137353_10000425 | F023611 | AGGAG | MARIPTRLAGPAQVSNAAATKYTVPALTKTIVRHVHIENPSGAAVTFTMSIGADAAATRLFDAYSIAAGAVLDHFCYYVIDAAEIIQALAGTNNILTLTIDGDEIVLG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |