NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136632_10141620

Scaffold Ga0136632_10141620


Overview

Basic Information
Taxon OID3300012093 Open in IMG/M
Scaffold IDGa0136632_10141620 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1266Long. (o)163.9666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019222Metagenome / Metatranscriptome231Y
F028304Metagenome / Metatranscriptome192Y
F037922Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0136632_101416202F028304AGGAGMAESREDVERALTELGWEVRTDDSGAIMGGYGKHHVMVSFQDGESTSVTISYVGKGGEILSRAWSGVERLPTPRNVVRMLSKNG*
Ga0136632_101416203F019222AGGAGMSEDESGELLVKEFTERTLNAARLHYLLRQEIGIEDPWHTIVLSICAFDKLHLKDGWEFILMNKQDIEDVAQLFELSNSPEEFREGLIALKEQDLMEQMEKRDLGQ*
Ga0136632_101416204F037922N/AMNSLPRIETMAQAREVLLGMSGEQEITAELDEWQASIRKHNDQEFSAAFPEHETGTIRLFDASQILLEHGDHDLYLDQP*
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