NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136554_1004921

Scaffold Ga0136554_1004921


Overview

Basic Information
Taxon OID3300012032 Open in IMG/M
Scaffold IDGa0136554_1004921 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5984
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006034Metagenome383Y
F013056Metagenome274Y
F018328Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0136554_10049212F018328N/ALLRHNAKTAGTLTTGGVGKQVELHVQAVQMLPDIESNYAQNHLRDVSYHDYYQFSLNNIASGESFNHLVSNGISNLKAVLIIPLLNTLNNNVNLFDDGQPQLLGHTNNFNVLVGGSNVLHADARYTYQSFDNEFFNEFGVNGNQSLGLGSCLIDFKSWLKKQYYYVNCSRVPMEQQNAYCSLQIKGTNSSALAMDYMIFAVYEKNFQLDAISGNINKID*
Ga0136554_10049213F013056GGAMFGKGVEMIIDPMTYNNMMKKLERGKGAVISMSGGEIEQNRMEGTGLIAGSGNKSGIFSRHKKAIRWRGFADDTLRKGVDTARYGYEQYKEATNPLASEGKKVIKGLSRMFGGELDGDEMEGEGIFDDIKKGYTKKVKNSALGKAFRESAGMAIGNVYDKGAKKLEVKISMVSLYLNI*
Ga0136554_10049214F006034N/AMLSNHDIDELVKKIAIPNFKGCFYKDTLKKIEPSSSYIINLNSEFSEKNERNAGSHWVALLTDDLHKTIYFDSYGDKESNEIKNLLKSNQYKIAHTSKNIQSLMSNLCGYFCLGFTYFLTVSKHRTKNIINDASIFLGLFEDLDIVDDIFKMNYFKLVLHGY*
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