| Basic Information | |
|---|---|
| Taxon OID | 3300012019 Open in IMG/M |
| Scaffold ID | Ga0120139_1002771 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4646 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Axel Heiberg Island, Nunavut | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .05 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012736 | Metagenome / Metatranscriptome | 278 | Y |
| F015243 | Metagenome / Metatranscriptome | 256 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0120139_10027713 | F015243 | GAG | MKLREKLFGPRENPEANATALKKEKTLAMINEADLGAKPRARRTVGLTEQRLRAANQQSWMTSTGGWSNFFGRFTRSSKR* |
| Ga0120139_10027716 | F012736 | N/A | MARISATYSARAFMNSSDRDNDTPSRNESPARQIARRLIESHRSQRAEGHPLARAAAAACDQLYRELSRWVGPDGCHALFTRALAQARTESPALEQIQLRARSEPYIDGVAETIMAHGDPATAEGLEAMLVHLIELLGRLIGDDMAMKLIERSLAASDRDDPAADGRREEA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |