NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153805_1040935

Scaffold Ga0153805_1040935


Overview

Basic Information
Taxon OID3300012013 Open in IMG/M
Scaffold IDGa0153805_1040935 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051740Metagenome / Metatranscriptome143N
F068819Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0153805_10409351F068819GGAMLVQEDIFNEPSRERLDFTGAKWVRFFTQKDDFLKSLIAIVNNSPTLRRIIEDKVNMVVGDGFIPMKGKSNTLLTTSMKGEVITDDSLNEIEEVIGQVNLHAQNLQEVLGSLAFDYDAFGNCFAEIVKGKVGSQPFTYIYHVPVYNIGIRKAEADQIIRSIGIYDNWEEVPLTTEGTYYE
Ga0153805_10409352F051740N/ADPTGKAGILKKAIGNFTQDELRGWHSVNPASVSQHVIFTPEKKTYEPNKEDDSSSTEQG*
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