NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120152_1061658

Scaffold Ga0120152_1061658


Overview

Basic Information
Taxon OID3300012011 Open in IMG/M
Scaffold IDGa0120152_1061658 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A30_65cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1163
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y
F012223Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0120152_10616582F000280AGAAGGMARNPDDQPRPARPLFGYRDVGEEVRHGKQALTRAWIVLAILIVIYLAWTLTVYFVEPGLR*
Ga0120152_10616583F002111AGAAGMAAISVLPFVSYSSMTETLIPAAQWPTVYASLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTPGQLEVFLERGYTFERLLADVGSGLTPSRSLVMEKVF*
Ga0120152_10616584F008327AGGAGMSMPTGDTPQKVQDFYLYLNGHQETTRPVESWHVDWLSVAWLWGFVFALLAVLLLWVRQYRTTRQRAGIYPVDSFGGWTTEGAGPATGFFLLFTVLIVAFAVVLIVGHLVWGQKF*
Ga0120152_10616585F012223N/AVFIWAWKAGHFHDLERQAAIPLLIEEEDYYTPEWAFDDEEWDE*
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Institute for Fundamental Biomedical Research
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