NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0120174_1010820

Scaffold Ga0120174_1010820


Overview

Basic Information
Taxon OID3300012008 Open in IMG/M
Scaffold IDGa0120174_1010820 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A39_80cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3146
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031718Metagenome / Metatranscriptome182Y
F052277Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0120174_10108201F031718N/AYRVGGDATQPIVVDEASLPDGWTANGPGRGDLGVTLSTSAEVELVVAPRSGISDVQVDLSKAHVIARDSSGREWGARMTGPATATFESLPVGTYTLEFDLSELTEPLVPRAPVPLLVVTGKDSKSITITLDPRPIRMWKGSGSPGPSHL*
Ga0120174_10108202F052277N/ALLQLNGAWKYTGVQTGPVRQTLTGTLTISRESGTSFQGRLDLTVMNEPTGTSSLLVGLVSGSESDSNVIDFDASLDTIRRHVGQIVADTITGNWIGSAPDGTMSSGTFRVEREPK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.