NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1049828

Scaffold Ga0119955_1049828


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1049828 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1306
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008235Metagenome / Metatranscriptome336N
F016959Metagenome / Metatranscriptome243N
F059897Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0119955_10498282F016959AGGAMSKPQWPTLKARLQHPLKDELTALHQLKQVLPLSKQAQKLYDKLSKKSIQEKD*
Ga0119955_10498283F008235N/AMINYLKNLFKKKTEPETTPVEKPKNKYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKAYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNAKIIIKDNDLYESTH*
Ga0119955_10498285F059897AGGMRLYSKNNKDDLFDRFEIDIHFPIFKWGTNSGNEWVNDFPTKYIDIKFDTQLVYRKDVTWTYFDLLFLGFGFTIIKQNSY*
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