NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1042314

Scaffold Ga0119955_1042314


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1042314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F020354Metagenome224Y
F031461Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0119955_10423142F003378GGAGMVEEVKIKQNATIAKFLDLGQRLLSLFLARALPAVTGGAIIGVSVAKAAILAGAMAVLEVVQKLASASTDGELTSEEIKEAFGNGKKK*
Ga0119955_10423143F020354N/AMISKLRDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKDGEDNGGRSED*
Ga0119955_10423144F031461N/APTSQPTQETDIPQTTQPKVESSSTTTLPDSGSAIEEFVAELDIKQEEPISDAKVEQILEVLKDAAPAQIVAAIEQVLASNITSDQAVSIASSPEVLAAVTEEQAVAIFEEIVVEELTPEVAEELVAVLNEAPTKVKKAFQETINVFAGVFDSFQMVGQTIPVGERRTLVAVSNTLVAVGATLRRKENK*
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