Scaffold Ga0119955

Basic Information
Taxon OID	3300012006 Open in IMG/M
Scaffold ID	Ga0119955_1000774 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012006 Open in IMG/M

Scaffold ID

Ga0119955_1000774 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17074
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (21.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17074

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (21.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F019928	Metagenome / Metatranscriptome	227	Y
F034842	Metagenome	173	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100077413	F019928	N/A	MKHSGVLSIIVFSTGYLTGISLLFEPAIYLKLAGATVIGYLTFILALQWEGQE*
Ga0119955_100077416	F001808	N/A	MMRYLAIILLLSSCSAQYHLNKAIKKGYKCEETGDTIRIMSVDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTIYKDRIVEKAQAKATRPKTRGNLSLLFVGVGIGLLLSYLFKFTKDKYLL*
Ga0119955_100077418	F071222	N/A	MDKEQILKIIFTEEASLYDQAKEFQEAFGSADEATQRIVTKWIAITNLIEKINEKTN*
Ga0119955_100077420	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDEEYMSLFILSDANLNLLKSKL*
Ga0119955_100077422	F003327	N/A	MTEFTQLAIEVQDAIANGDYTHQKYLRFREWYFQNYEGTKRNANRDFAMFDLMYGLDVPIKNDDNEDI*
Ga0119955_10007743	F034842	N/A	MISYQSIVDKITAFYDNHAQVKKVGSDFKEQMVNFATKDEKYPLVYVVPTGVTPYQNVSIFNIELYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNLSVVIPSWTNCPIPKKIYTAYSQALQWDSIPLQNSIIFFCNGVQWDVQTGIASGEIGAFVAMCNANLQGSDFTQYGTYFDNGDNRVRLEMPYHVYNTFCPNGEVTLEITAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119955_1000774

Overview

Ecosystem & Geography

Associated Families

Sequences