NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1000509

Scaffold Ga0119955_1000509


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1000509 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21186
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (72.41%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000473Metagenome / Metatranscriptome1097Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F005741Metagenome / Metatranscriptome391Y
F012975Metagenome / Metatranscriptome275Y
F013527Metagenome / Metatranscriptome270Y
F026561Metagenome / Metatranscriptome197Y
F074872Metagenome / Metatranscriptome119Y
F076101Metagenome / Metatranscriptome118Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0119955_10005091F076101AGGAMYKITLAYDGNAPHWQKDYENEFEAWKDFFAFVDWGFADKFSTVNIYNSEMKCFTKIFYREERKVVEVK*
Ga0119955_100050910F005741AGGMANRFRIEIYDANKQNDLTIYSEQGIDKEYLTELVFSNLRRFNGTVRAYVFDSLKKKKTTAMFLDEEIVDSTNAKTNLTTAKQLNLI*
Ga0119955_100050913F003422N/AMTNELVSSVYTFVCDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVNMYLSKIDSVKDIITEAYADSDDQDTLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDIESEIYDNLYVESQNGNIEIVDTEVTNVREN*
Ga0119955_100050914F000311N/AMYFELTAPDRLSMEMAYWEAQITGLDPEAMTPLTFNIGTGSIEKVSRLRDKFNLVESYMADQEPTGYLRG*
Ga0119955_100050915F001043GAGGMSDYKDGFADGYKFAREEITEKLAEIDINDIDSWILARLSDMIEGGQL*
Ga0119955_100050917F001125AGGCGGMGDRANFGFKQSSGETIVLYGHWAGYQMLSKLSHAVEQARPRWTDESYATRICISQLVGEDWNSETGWGLSVNRILDNEHKIPVIDWSAQTFSLHEELDGPPIFTMDLNAFCSKYSELASV*
Ga0119955_100050919F000868AGGCGGMSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMYADYRFAEMSSDNYIKGRFNQFYDLNPDDQYYLEWDEEA*
Ga0119955_10005092F013527AGGMKTFEFLTYINVEAENYDEAIDVFQFQLKYGMNKDNVYVADIKDLELA*
Ga0119955_100050923F000263AGGMNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDALVALYELTYQLSFAIGARDEA*
Ga0119955_100050925F000441AGGAGGMSDGYLNEQLDKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLM*
Ga0119955_100050936F026561GGAMSMDGTGMTPPPQSSPAGAVNSTEVGRKKPHQGKLRSGLKVDTNRHGIRRETSLDPKPPRKVGRKKI*
Ga0119955_100050947F077310N/AMPLDANYIVVVISASAVSGIGTALVVGRIEAKREKIRKTEREQDALKIELKDLQIKLYQLEKDLNEWREKYYNAIQELISVKAELEESLIKLSLIDLELHTHDD*
Ga0119955_100050950F000473AGGAMASDKNHFKYGINQWTGEPAKPVFYTPEMAKRVREIPQPVLLLMDVAMYPDFIGIKLYEDNFMQFDGSSKERVIDYVGKVKKLIESYGTRCELVGVPSERVL*
Ga0119955_100050952F012975AGGMLHLTLKGVEIFIERSKTKSQESYWDNYDLMIWKKDSGGFSSVKGMFRKDSWGIADRISVNEQGVWKLPAKYVKHFK*
Ga0119955_10005098F074872AGGGGGMSALYVTINPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNSALV*
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