Scaffold Ga0137455_1054791

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0137455_1054791

Scaffold Ga0137455_1054791

Overview

Basic Information
Taxon OID	3300011429 Open in IMG/M
Scaffold ID	Ga0137455_1054791 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1129
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9777	Long. (^o)	-107.003	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009097	Metagenome / Metatranscriptome	323	Y
F055540	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137455_10547911	F055540	N/A	IQSLSRDALEAMGRPVEAVAAQGGGPPVRRPRGGGEASSSSEIIVQSVPGRQLALSGDTAGEGPATATSHRRRLPAKVDRNPPAENRRPARASARDLAGTVRQLRSRLESLEDEQEQLRAELALLRGDAEAYEGTPSIFVTCWFRATLILIVLAIVVVITVPWLMDLLEVGAWDSRPPVRHEAPAASPNPTPSSR*
Ga0137455_10547912	F009097	GAG	MRKWVGALSLVWLLWSDLSVIVKDNPLDTIVLRWLARVPRLQTDRIIAGRYVTGEECKAALERHLVTVKAINDSWSGHAFEREGDTGTIHYFPDGIVYARAALRCAEQ*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.