Scaffold Ga0153700_11084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153700_11084

Scaffold Ga0153700_11084

Overview

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_11084 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	12379
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005974	Metagenome / Metatranscriptome	384	Y
F066226	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_110841	F005974	N/A	VRFSLDDFLRGNPYERAQVYEILNRIGAMTVEEIRSEEDLIS*
Ga0153700_1108416	F066226	AGG	VSFLENYEDVATRIKRLHATHPTNRVETSIIDFNAQGGYILVECRIFKEYEDEKPSAIDFAFGRVESYNVQMKRWFVEDTVTSAIGRCAGLLLGSDVRPTRQNMEQVETMPKAFADKPEVDLWATPLAESGFATAGSAIEDIQSKLGGEILSEAPICAHGHMILKEGTSPKTSKPYRGHVCPEKTKANQCAPIWYEVTSSGSWKAQG*

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