| Basic Information | |
|---|---|
| Taxon OID | 3300011339 Open in IMG/M |
| Scaffold ID | Ga0153700_11058 Open in IMG/M |
| Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12599 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Seoul, South Korea | |||||||
| Coordinates | Lat. (o) | 37.5254611 | Long. (o) | 127.0168945 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F002406 | Metagenome | 562 | Y |
| F078699 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153700_1105810 | F002406 | N/A | MEDLKWIRAMSERLRDTLTNEYDDETKDLIIRAFAAGLFKNNTVLEELKSSSLIESDYFEDEDEETN* |
| Ga0153700_1105812 | F002398 | GGA | MLPFISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNLIEKSKKEFFEYLDSVGIEHSKVGSYYFFNRKTK* |
| Ga0153700_110587 | F078699 | GAGG | MKLGFKLVGTLEVPDDIIFHEDVLNQLYALEMNDKMYMLQMCLVAETPQGEYEMVHMAEEMEEHNFKNVRYSDAEFFELDES* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |