| Basic Information | |
|---|---|
| Taxon OID | 3300011336 Open in IMG/M |
| Scaffold ID | Ga0153703_1344 Open in IMG/M |
| Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16616 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (89.66%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021491 | Metagenome / Metatranscriptome | 218 | Y |
| F023804 | Metagenome | 208 | Y |
| F052462 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153703_134420 | F023804 | AGGAG | MTETLYKFNCEVEGVELTCHLEYEPEELNHGEAPDFPACMNLVNAFCGDIDIAHILMQSIVDHICEEALTQLNSESE* |
| Ga0153703_134423 | F021491 | AGGA | MSVQKKIDEMVLGYLKAAEGKARIMSPQDIAKLVSEAAHKGAMMGYDAGMQMARRSHGKELEIAELTVKELTERVKELEMQMIVQQ* |
| Ga0153703_134427 | F052462 | AGGA | MTRPIGISVPHRKVVDDDDIQTYKKPWVSLTEEEIHKCIAYGKGGCEIEQTARNIELKLKGLNYD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |