NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153703_1321

Scaffold Ga0153703_1321


Overview

Basic Information
Taxon OID3300011336 Open in IMG/M
Scaffold IDGa0153703_1321 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)17264
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (93.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHanam-si, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.5415972Long. (o)127.243111Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F003067Metagenome / Metatranscriptome509Y
F007027Metagenome359Y
F064493Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0153703_13211F007027AGGAGMDIIQFECRKCKKVTDQIERIVSDNLPPNVKTLQCCKCGCMSVCLIVGLDDANV*
Ga0153703_132126F007027AGGAGMDIIRFECRKCKKVTDQIERIVSDNLPPNVKTLQCCKCGCMSVCLIVGLDDANV*
Ga0153703_132129F064493N/AVENAITSCYGRVIGLLTPGGIARSTKQDMEKVEALSAKDVAPINDDLWATNGIGATIKNVADALGATVLEGKPECKHGPRVWREGVSAKTGKAWGNYSCVEKSKATQCEPYWYVFTSDGTWKPQV*
Ga0153703_13216F003067AGGMEQAQLLVGIALGSFTILGLAAGLIRHLVKYYLAELKPDGNGGHNLRGRVDRIEARVDKIYEMLLEDRLSK*
Ga0153703_13217F002269AGGAGMKEQAIAAAKSYARAALASVAALYMSGISDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.