NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153703_1203

Scaffold Ga0153703_1203


Overview

Basic Information
Taxon OID3300011336 Open in IMG/M
Scaffold IDGa0153703_1203 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)22120
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHanam-si, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.5415972Long. (o)127.243111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001299Metagenome / Metatranscriptome727Y
F015856Metagenome / Metatranscriptome251Y
F020635Metagenome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0153703_120312F015856N/AMINEDTIDHYNSRLTVDLGQISKLSPSQQDKVRHYGSQAETLLKNKELALFIHHFKFSLADELAAIRSHTQDDNTRRIAISNELAGIDNFVNSLKRAVYLKNRVGNTNEVPNT*
Ga0153703_12035F020635AGGAGLEFTLKQLSWIVIGSLGIGGTGYLSLNEKIDALDKKTAVIHTNTEHQTKALERIETKLNSK*
Ga0153703_12039F001299N/AMNDINQPEYLDDSDPEKNLDYWRQDHGGTITNHNGVADRLLKNDKLYNAMKGDWTRSDYNKSGNIKVTTGREDGKFYIQREQLNLQPIIEAVKDYRTMAEKGVADPLGPYMPDGTIGWKWMDLPNVVAIKISDEYFGGMPWQTLKHDRTLKAQFYRVVETEYPQFVCYPHGKLPIPVDVPYPTKVGQKRFFQGR*
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