Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1695 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1695 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13150
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13150

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_169510	F008741	GAG	MSAKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFYVLCPADIKIEGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFDGLVSMD*
Ga0153698_169511	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0153698_169513	F009142	N/A	MNNSVQINVEDALENLLAHISGLNIYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI*
Ga0153698_169517	F012433	GAG	MSSDQIGELRERLARIEERQTNIISILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALISGAVFSTIWELIKVRVFPR*
Ga0153698_169518	F006138	GAGG	MAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0153698_169520	F019102	N/A	MSISLEEELNSAFISPQKEFMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYVHILLAKNKKDAIKLCWNRDLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA*
Ga0153698_16956	F003049	AGAAGG	MKNAKQIIGYRKTKKGENTKGLGMIKFGKSRIDKTKYVLVDINYDEKAGKELYEAGMIALKHDPEAVIEYAIKKALAEMVKCKK*
Ga0153698_16958	F030060	GGCGG	MTKGIITSESPEIHWKYLNVSGGRVLDLGCAFWTEAERQEANGTTKYFLSQRPEFYMGVDINQGDITTLSAQYPQGKFLCEKADSSNQIDAWMKEHSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDTWLKEFMDWFDSIGFECYRHDSVSFCPEISVIYGRLKC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1695

Overview

Ecosystem & Geography

Associated Families

Sequences