NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151674_1018768

Scaffold Ga0151674_1018768


Overview

Basic Information
Taxon OID3300011252 Open in IMG/M
Scaffold IDGa0151674_1018768 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2647
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012123Metagenome283Y
F016409Metagenome247Y
F042577Metagenome158N
F097475Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151674_10187681F016409AGAAGMLNANELGYYLWKRINQDQESFRKTRPKNIRGLYFNQVDLNGYIRDYFNYGFDWDDTSKEELYSDTYWDERDDDV
Ga0151674_10187682F012123AGGAGVNKRNPCRINKVEYKSDGTHIVERRGYAQERRTFDGVEMVFVMEGGDSGIGYWYPSSEVRMTKGKWTNDTGVVVSRKSFWRRSK*
Ga0151674_10187685F097475AGGALIDKESLEIKLKKLVDLCSKNEPTDKEMKKHFLFDAHQIQAYGMYRTIQDKFEFLTSEDIIDIMKSANILWKIQNGKLPNSTIRDWMEVLNEEIETLMRDGNSIGAIKEYRSTTLKYSGVQPTIRESKEYVDRYMDSVEKNFTKNRSVV*
Ga0151674_10187686F042577GGAGMSLRAYHKGTRKKIEKLIKDHVDEMRRHYPWDGEHKAVTKEIIKLFRQDS*
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