NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136713_1000113

Scaffold Ga0136713_1000113


Overview

Basic Information
Taxon OID3300011183 Open in IMG/M
Scaffold IDGa0136713_1000113 Open in IMG/M
Source Dataset NameFreshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8697
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014605Metagenome / Metatranscriptome261N
F068589Metagenome124Y
F091646Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136713_10001133F091646N/AMNLLQKDEIGIPSTLVAIMANVFQAIGVDFINVVFTMVISVLSIVYLVYKIKNEKAIFDKRKDEEGK*
Ga0136713_10001134F014605N/AMKVNLAVAVTDIEGNKIPNEKGEEMHLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKEKIKAKGFTVLILAPLYEALSEK*
Ga0136713_10001135F068589N/AMKQIEPVSIWDNGTVQEAKILNAYAINVTLGTSATFYYQLFAESIDLAVGTQLAQGNLTMTGEAYAQWEMDDYAWDWVAHQLNLTITGDYVPHVPPQPETQEISQDTIS*
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