| Basic Information | |
|---|---|
| Taxon OID | 3300011128 Open in IMG/M |
| Scaffold ID | Ga0151669_100572 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Toyama Prefectural University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34502 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.07%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Japan Sea near Toyama Prefecture, JAPAN | |||||||
| Coordinates | Lat. (o) | 37.04027 | Long. (o) | 137.37583 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000751 | Metagenome / Metatranscriptome | 907 | Y |
| F010694 | Metagenome / Metatranscriptome | 300 | N |
| F014160 | Metagenome / Metatranscriptome | 265 | N |
| F015230 | Metagenome | 256 | N |
| F025069 | Metagenome / Metatranscriptome | 203 | N |
| F025529 | Metagenome / Metatranscriptome | 201 | N |
| F032718 | Metagenome / Metatranscriptome | 179 | N |
| F034621 | Metagenome | 174 | N |
| F045196 | Metagenome / Metatranscriptome | 153 | N |
| F052036 | Metagenome | 143 | Y |
| F054043 | Metagenome | 140 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151669_10057212 | F025529 | N/A | MQGSKEYFLRVKEAEYFELPQALKERSVVYYNDYELYKNDPSFKALNKAYRDAKKALENWKYDQRHK* |
| Ga0151669_10057218 | F025069 | N/A | MYRILADYITLGIWGMSMANTIADFDIASASSLAQLVLSILGIVYLGVKIVNESLNGKINREGKRLENEKANRDLIDDENEKL* |
| Ga0151669_10057219 | F000751 | N/A | MNIYKTNFPTEQEGKDYLLSIGVLVETDEQIVFAKDTAAVVYIGKVVKIPATYDKDGNIITPAVYYPGYAIDVMSSLDLDFGSFMVYPIEAAHSFYGYARNAEVPPVKKNAESVESAENVEKNE* |
| Ga0151669_1005722 | F045196 | N/A | MKVTKKDLKNFKGDKRSKEYRDLKLAYDKTIETKNVDDVGIGTALEKVFKATGISKLVEAFTPEGEDCGCKERKRLLNNSPTFNASQRPKRCMTKEMFEAYDKFVKSREIDKWSAEESKLVFNTYEWVFALRYDTKRMCANCNGTANILKMITASLDKVHETY* |
| Ga0151669_10057231 | F034621 | N/A | MSNHITEVIDILRRGEFYGAGDYTEIAKGKNEMVITWRGLKRKVKRIIKAKK* |
| Ga0151669_10057233 | F032718 | N/A | MIRALSPFYIDTPLVYGGVTCAKYTLNVWVWNGDKSTPDSTNSYQITYQNTTASTGSHSININAIIQDYIEFTEPSPTLSTGIQLIDGNNQQWVYTYVTYDAVATLYHETTQIMTLGYSYGNEGRNVTAVSNQTLLNPQEYKVNRDGNFIFPIYVPTGATSSAVTVKSYPSLEINYSATPTLSDESSEIVQYLWVELSLAVDEAYIEIVWQGQTTTLDLTDECKYTPLDVFFQNKDGALQSFTFFKKQEETIDVTDSSFETNRGQAKDGFHQFVRYGVQGRTTLMAETGWLDEDMNEVLKQILLTERIWSYNSTTYTPLNIKKTSQKFKTRQNDRLINYTMTFEMSYNEINNI* |
| Ga0151669_10057241 | F052036 | N/A | MDLATTLNRLFDKDLDLTSKQRQKLITIIGEHSQYEFNAGFQAAKKII* |
| Ga0151669_10057242 | F010694 | N/A | MTIPVIFDNPHDFFEEATRQEYTDAHDLFYRSMVEYLLDESIQYVCTFIYNDYDKYLFEPQSEDDEIILSRDALLYFEYIEEYETCQLIFEVLNE* |
| Ga0151669_10057249 | F054043 | N/A | MKNLLQKLQPDLKDKLALLNEEYPFTAHRIIKDLEATDNVYDVTFLTMATMQKFLGINLDDFYFIFELDVERG* |
| Ga0151669_10057251 | F015230 | N/A | MNDSGDITAKFTATERAIDKLQQPTIEIERTRSAIRETQKRNDELRAELEAIQKRIEKGYKAIRESSNGEQRIASVKKEISRLGGLIAWQDNRRKQFKTIIERGY* |
| Ga0151669_1005729 | F014160 | N/A | MKTLKDSMQDFTAPFIEWESDHDNEVLQQDFVEAQLGEYGIEFSIYASRDISISHGTHFETQEVTIGDSHFDIEILAVFDQDYDDIDITDEEDEMIINVIAHYYE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |