NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1587

Scaffold Ga0151517_1587


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1587 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12660
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F001827Metagenome / Metatranscriptome629Y
F005234Metagenome / Metatranscriptome407Y
F060702Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_15871F060702N/AMSGKSVTVEENPGKGTNRSKLDSMDVSIGRISKSAGNETIKTDGIKIRGTGAATKGVMARGPMA*
Ga0151517_158710F005234AGGAGMQTDVLSTAAAAGATTTIFAGPARIKGISISYSTGATVVLNDGTGGTAKFSWTAPAAAGSIYMVFPGEGIKCNTNISAVVSATTTAVVFYG*
Ga0151517_15872F000346AGGAGMDKKDLKQDKKMIAGAVHKHEKKMHPGKPMTKLAKGGKTNEMMKQYGRGMAKVVNQRGASRGG*
Ga0151517_15878F001827GGAMNNDVKTMTDGAAVVVGLGGFMGWVTPVVALIGGVLTIVWMVIRIWETETVKSLVAKYAKHK*
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