NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1494

Scaffold Ga0151517_1494


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1494 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14293
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F055684Metagenome / Metatranscriptome138N
F074545Metagenome / Metatranscriptome119Y
F081071Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_149417F074545AGGAMALTLSETSKNTERQLPEAGATTGVLFSLVDLGTQKVTWDGE
Ga0151517_14943F055684AGGAGMWITSDNNIIRQPQGIRIGDVNHPASIFWCWSKGQLAEIGIKPYHPGSVPSGHRVTGAYNEEVDGEVYERFNTEPLPEPEPTPEEPVNDPV*
Ga0151517_14944F000635AGGAGMTLSEIAQYAGEKVGKTDSDTLTFLQKAASLNYRRVWNFAPWRETVTSSTYSVGTGRTVTLGSNVETPLSVAYDKNEVEPIDLATIVSQDADLLEETRTGDPQLYHFTGRNTSGISQLDLYPRLDTAGTIALRVVEKLKCLTRNNYVVDFPPSTQALDDELKLPHVHHVVLALTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQISPVQLGELTIEEITAA*
Ga0151517_14946F081071GAGGVTAVEYIEASGVPESMWPNFREWFNWHQERGLVGVAKDGDQVAGVAIARCLDLGQEADHYAHNEDGDRVFVDLTVTSIDGKSNTLSRKALKCLLSILWDRFGPRRRITFKRNGVYKEYDYYNFMRKAMN*
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