| Basic Information | |
|---|---|
| Taxon OID | 3300011113 Open in IMG/M |
| Scaffold ID | Ga0151517_1491 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14375 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (68.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F004599 | Metagenome / Metatranscriptome | 431 | N |
| F020681 | Metagenome / Metatranscriptome | 222 | Y |
| F043389 | Metagenome / Metatranscriptome | 156 | N |
| F083918 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151517_149111 | F000468 | N/A | MTAWSPDWKLTVAGVDYTDIAISDIAHQAGRDDIYQQPNPSYLSITFVALSGQTLPFDINDSLSLQVKDSSAAYVNLFGGDITDITVAVGATGSNATVVEYTVLAMGSLVKLAKELYAGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYDATETWANALNLGLGEIDTPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTYGYVDLDANHALGQGLSTITRSGDIRNDIAINYGNNFGSQKTATSAASIALYGYKAESINSVIHSAVDAQAVADRYIAQRAYPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPEQISNGEFEGYVEGWSWSTRFNELFLTINLSPVAFSQVAMRWNTTPITETWQTIDPTLTWEYATIVA* |
| Ga0151517_149119 | F043389 | GGA | MIETSTMWIFLYCILGIFIGWAAVVKIMEQSFDRGYWSGRSAGWRAANEHYEKIRKLKSESVFDYDKQN* |
| Ga0151517_149121 | F004599 | GAG | MMAFNLSEYEDVATLNKWLISNYPNFRSDISVISADPDKGYILVQATLWRDSNDQSPAVSNIAFGSRDTYIQNMRKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPVKNIYGKSGNSKVIEMALRKSFADDGKSTSEPTTWSIGDVAEALSTKPKQQECSHGLMILKEGTAKSGKPYYGYVCSAPKGEQCDAKWAVTAGNGSWFFREEE* |
| Ga0151517_149122 | F083918 | AGGAGG | MGYVEIVDGSHYLARLENDKVTIEPTIDRCVSCNDDRLLHDGQYLVCAICHCRQ* |
| Ga0151517_149123 | F020681 | AGGA | MVKFRCNFCSATTEFIWLDQYQTATGFRVFQCLNCCAVGTKNLAEATDTQETVQRCTSCGAWQFADQECHTCALVRSK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |