NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1469

Scaffold Ga0151517_1469


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1469 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14753
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (29.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005387Metagenome / Metatranscriptome402Y
F010913Metagenome / Metatranscriptome297N
F041194Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_146914F041194N/AMDNLQITCNYCDMPAKLKRDKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA*
Ga0151517_14693F010913N/AMNTLKKFFKAVFGNNDNNECYNLMLLKAVLDSNKQQIERLNEIMAAINNLQDALARLSAATDSAVTVLNTPHPSEEAIQAAADLVNAQAARLEAASDNDPTTTA*
Ga0151517_146933F005387N/AMEKLNRKGFFSTLFGGIAGVVAGSTVKASEPSVPTPPVVENVLTCEKLVFTHSSGASCVMQFRDSDNFEIKVNNSEEISINICSPLNKPAVVKAETNSFGYYGVESRLTIASNGNIGLGTAYPKAKLDIRD*
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