| Basic Information | |
|---|---|
| Taxon OID | 3300011113 Open in IMG/M |
| Scaffold ID | Ga0151517_1456 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15037 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F001834 | Metagenome / Metatranscriptome | 628 | Y |
| F002044 | Metagenome / Metatranscriptome | 599 | Y |
| F002357 | Metagenome / Metatranscriptome | 567 | Y |
| F014134 | Metagenome | 265 | N |
| F055549 | Metagenome | 138 | Y |
| F094891 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151517_145610 | F002044 | AGTAG | MANTRKPNKRKKINRRVVRHTPEPLSKLDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD* |
| Ga0151517_145614 | F094891 | GGA | MEHNMKIVEKIFDVQTGEESIVERDETTAEKKIREKRESEIAARQSELEAKIAARQAIADRLGLTADELQVLLG* |
| Ga0151517_145616 | F000468 | AGG | MTVWTPDWKLTVAGVDYTDIAIADITHQAGRDDIYSQPNPSYLQVSLVALSGQTLPFAINDSLDLQVKNSSGNYVSLFGGDITDLTVEVGATGSLATVVNYTILAMGSLVKLAKEIYTGTIAQDEDGNQIYDLLSSLLLGAWNDVPSSTTWATYNATTTWANAENQGLGEIDTPGLYTMENRAAEPDTLYNIVSLIANSAFGYIYESPNGDIGYADADHRQTYLAANGYVDLDANHALGQGLSTITRSGDIRNDIYINYGNNYGSQKTASSASSIALYGYKSESINTVLHDATSAQEVADRYIAQRAFPLPVFQSITFPITNPEIDDSDRDNLLTIFMGQPLDIQNLPLQISLGRFQGYVEGWSWSTRFNELFLTINLSPVAFSQVATRWNAVSAAEAWNTLSNTLTWEYATIVA* |
| Ga0151517_145621 | F001834 | N/A | MPNQTILEQIRTPLATALSSVAGNVYGFVPETVIPPAVVVVPDSPYLEFETINKSNIRAKVNFTISIAVAYNSNPASLDNIEQLIVSVLAVIPVGYIVSSVERPTVQQVGASTLLIADVRVSTYYTRTI* |
| Ga0151517_145625 | F014134 | N/A | LSAAKLPFGDGSWVIGRRASRVAVCAAVASALATYFATQPETEIDIQVG* |
| Ga0151517_14565 | F055549 | N/A | MTDYFMRAICFDAIPATLLTGFLTMPNYDYMCDKEGTLIVLELPMDHKIPNCQVCDEPLRRVYTVVPTIFKGTGWAGKLG* |
| Ga0151517_14566 | F002357 | GGAG | MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDAEKGYILVQATLWRDATDSSPAVSNIAFGSRDTYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVEINPSFKEKLESRQNMYGKPGTKSAQIETILRDSFAADKKPEPVAWSVGDVVAEIGASTPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCEAKWAKLTANGKWYFEGGE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |