Scaffold Ga0151517_1440

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151517_1440

Scaffold Ga0151517_1440

Overview

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1440 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	15441
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F003153	Metagenome / Metatranscriptome	504	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_144010	F003153	AGGAG	MPVVVTGVKQLQKAMRDVDKDLNKEMSKNIKQAMLIVRDRARSYLPAQNEVLSGWGKGTGSLETVKDPNRLFPPYDYEYAKSMVAYSAGQNKRNDKGFKAAFYVYNNSRSGAIFETAGRIGRPRGNKSLNPNAPVQFNSAAEMLSSMKGQGKQRGRVIYRAWDETKDVIIPRVVNAIDTVAKKFIKDTEIRKAA*
Ga0151517_144023	F000141	GGA	MYTKFKCNGCDRKTEFLWLDQLDTPEGFKAYQCMDCGCVGVKNIAEALHIPDSNIDRCAQCGGWQFLGTGCHTCALIGAK*

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