| Basic Information | |
|---|---|
| Taxon OID | 3300011013 Open in IMG/M |
| Scaffold ID | Ga0114934_10010300 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5416 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kolumbo volcano, Aegean Sea | |||||||
| Coordinates | Lat. (o) | 36.5275 | Long. (o) | 25.4914 | Alt. (m) | Depth (m) | 482 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011890 | Metagenome | 286 | Y |
| F012068 | Metagenome | 284 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114934_100103002 | F011890 | AGGAG | MKKLIIVLLTLFFTTVSYAETITVINSGKAGGSFNARTQMYKDGLIEQGYNVVFLNIGKISQAVKMFKEADEPTIMVYATNQVYKQNLFHTEENFIMLEYQQPLYICRTNTSKDKTVGLTVAHGKGYDPKLLTSLLGNNITLVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYMASGEGTCEPSDKLPTMEATVIGINIDVQGIREVIYNISISGPFAEYHTSRKLHRPIGSWQDELALAQSGEKGYLIKK* |
| Ga0114934_100103004 | F012068 | N/A | MNILAKMFEPSKDRLISNAKKMMDNAQDPWFKQYWQKVYVHLCRQYKKLH* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |