NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137575_10000053

Scaffold Ga0137575_10000053


Overview

Basic Information
Taxon OID3300010970 Open in IMG/M
Scaffold IDGa0137575_10000053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFASTERIS
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28843
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (76.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F011487Metagenome / Metatranscriptome290Y
F017301Metagenome / Metatranscriptome241Y
F038479Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0137575_100000531F017301AGGAGGMNTEQLKAMLGSYGRSALAAGLALYMSGVTDPKTLAYSLLAAVAPVALRAINPNDKAFGRLPDTKEVDALLKTAKVVKAPAKKKAAAKKAAPKK*
Ga0137575_1000005350F011487N/AMYEAISDEFYDEYYSTVCPSCKENSVDEYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY*
Ga0137575_1000005351F002515N/AMTTKKTDEELRRLMELRRSNAATPIKSKKAYSRKGKKCQSYLLDLNYKNR*
Ga0137575_1000005368F038479AGGTGGMTTLNTYKGLSLDQKITIAAQMVADGKLVSFRGASADTYIKVQKLANKIKQDREFPQCPCGECD*
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