NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139176_100290

Scaffold Ga0139176_100290


Overview

Basic Information
Taxon OID3300010942 Open in IMG/M
Scaffold IDGa0139176_100290 Open in IMG/M
Source Dataset NameWastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAutonomous University of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8301
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Viral Communities And Vesicles From Water Purifying Plant In Alicante,Spain

Source Dataset Sampling Location
Location NameAlicante,Spain
CoordinatesLat. (o)38.34Long. (o)-0.48Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095349Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0139176_1002903F095349AGGAGMSAPTGLTCEEINDNFQRETGRIQQGTYRLGLYKDPLLRLVTKSAFPDHMGKVITNTIAQRTVATGSGWEDINISDGASVDGCAVPVKKVSYAFDQNTFSLKAQALESDWICLEDVRTSTFPEDDINNYIKGIQDNINVEWIKRYDDDLLALSDRKVVVAPGLPEDDTAFPSTAPTSPLTMGVLRNFHQALYEDNAGDNGDAVTDDGAPVFHVLSDRATIENLIKLNDDLRQDVRWSDRVNDLLGPNGAALLPKKAYAGLMFHSRPFPKRFNDDGAGGYTEVAPYSTTAATKGTKAVISAAYKAAKYGSSQIFVPAAQEWLVPNANMKVGGKVVFGPQNYTGDLKWMNKYDRTCNPDENSGFFRAKMASAVKSIMPSWSIYILHLRCNLADDLIACSSGSGYPYLR*
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