| Basic Information | |
|---|---|
| Taxon OID | 3300010932 Open in IMG/M |
| Scaffold ID | Ga0137843_1001306 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Hellenic Centre for Marine Research (HCMR) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2676 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Santorini, Greece | |||||||
| Coordinates | Lat. (o) | 36.45421 | Long. (o) | 25.40539 | Alt. (m) | Depth (m) | 229 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014794 | Metagenome / Metatranscriptome | 260 | Y |
| F018622 | Metagenome | 234 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0137843_10013062 | F018622 | N/A | MIIQKSTLDTLLQNNVLEVRFPRRIVKPGLAATRRMLCTNSLKLLNSVNGRISLNYFAPKGPPKPYLGPDNLTVAWDILMQDYRNINCNQVDLIQEIPANEDFWIYFNENIYPMSAQQKFNFMNS* |
| Ga0137843_10013063 | F014794 | N/A | MAMASIDNLAPTRSLIDLSDPNAGEVGIDDYELNFIFDDILLIEYVDETEHGDVMKGGIVVPSNALNKAWRKGKVILSGPDAKYAKEGDIVIFPNNMGVSISGVTITGKGKVKKGVFLNEERMFGICKLKDDNTEINS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |