| Basic Information | |
|---|---|
| Taxon OID | 3300010885 Open in IMG/M |
| Scaffold ID | Ga0133913_13447440 Open in IMG/M |
| Source Dataset Name | northern Canada Lakes Co-assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1034 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019762 | Metagenome / Metatranscriptome | 228 | Y |
| F024559 | Metagenome / Metatranscriptome | 205 | Y |
| F067423 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0133913_134474401 | F024559 | GGAGG | MTSALIKLILGIALILVVIVFGPIVGIWSLNTLFPVLQIPLTLETWCAFFLLFGSIT |
| Ga0133913_134474403 | F019762 | AGGAG | MMDLHESVAHTRKEMTVKESDGFRVRLVKHEVISPKGLFSLDIIQESLKDGKVADSQTYNFFMNKEELQSLAHGLTA* |
| Ga0133913_134474404 | F067423 | N/A | LNTIEKVLQIPERDVILERKHPKLKKLYDEYITALGKYRTFESIKGDE* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |