| Basic Information | |
|---|---|
| Taxon OID | 3300010885 Open in IMG/M |
| Scaffold ID | Ga0133913_13128168 Open in IMG/M |
| Source Dataset Name | northern Canada Lakes Co-assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1097 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001008 | Metagenome / Metatranscriptome | 807 | Y |
| F009749 | Metagenome / Metatranscriptome | 313 | Y |
| F048779 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0133913_131281681 | F009749 | N/A | SPAGDFMNKDIIKFDSQKACEAVRVQLPNLDHPMRVKHKGLCVTQDHWEGKKQMPGVAYD |
| Ga0133913_131281682 | F001008 | GGAG | MTKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPKTEDNPDGYWLHPEDVTGNIRRIEALNLIINDFITTSDEIK* |
| Ga0133913_131281684 | F048779 | GAG | MSQSKHKKYQWIDGETADRITSLNLKDYRAYLKKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |