NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_12542164

Scaffold Ga0133913_12542164


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_12542164 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1246
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F028423Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_125421641F018928AGGAGMIVKSLNTMDKIINKNKNLIWDGWDVIDLKESDMAKTSVNGIRIKDKWYLHKIYKPNRNGWDIPNKYRE*
Ga0133913_125421643F006885N/AMEYLLIVGLTFIVSWSIIKISNKKRGKFLSKIRYRQSNIYEMVKDVIPKEMFEKPKVITQSQKHVQKNMLKVVITEGKAYWILDNVFYTANAINGRVDESTVEPLDIQNLSKKDLSKMLSILDDLRKGIESNDSGSSGNNGV*
Ga0133913_125421644F028423AGTAGGMENLEKNELIQLVGFYKQKLSDTELELLKLQLELNKLNSFILSSAQEPAKKSK*
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