NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10069532

Scaffold Ga0133913_10069532


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10069532 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9447
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F018919Metagenome / Metatranscriptome232Y
F020001Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_1006953213F018919AGGAGMATNPLQLSVAKIYPGNYINVLRYWHSESSFSFLNENGTNETYTSQPVGGPVGVIFRPGWVAQQAVGYVDLSYKPGGTSNQLDYYAQPWASGQNSTNQPFTAGDIIIPSPDAYKDVRADISDGITVPSGAYVYRVSVRLDGGDVISSGIAGAQSAPALGVGPALSSGLTTTPSPSGFFANLVGSSSRIENGAFVSSDAWNSANMHTVKADTKYRLYSTATVPGSGLGLGSGVYDPRAGVNKLAGRNKALGIAEVCWLLPDEAPKRDDLALQPAGLIESNAYTSTVPS*
Ga0133913_100695324F020001N/AMSDSKTLLTIAETAELLNCSSGFVRKRIALSEANQPGGWPKTVYVNLQPNGAKSLYRVNKNALENYLQSTSSAKVETIESTPAPAVCSF*
Ga0133913_100695328F001215GAGMASTSTNKQPCLIDRPFLRGARITNSTGTCNPTNPNLTDLIQLVRVGDLPSEDAALVEDITIISNEDYPNKSGIRTADIGIYVYAPNQAAPSTSAALMVGRFEVGLSGDTFGYPLPVQLFAVNAPVPQTGDTNLLAPIQIGKGEGLYLEKGYILCAGYLGNGPTAVSGGLSPSGITIWCQGGFY*
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