| Basic Information | |
|---|---|
| Taxon OID | 3300010400 Open in IMG/M |
| Scaffold ID | Ga0134122_10000094 Open in IMG/M |
| Source Dataset Name | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48040 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (75.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Kellog Biological Station, Michigan | |||||||
| Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016408 | Metagenome / Metatranscriptome | 247 | Y |
| F019245 | Metagenome | 231 | Y |
| F042960 | Metagenome / Metatranscriptome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134122_100000941 | F019245 | AGGAG | METKVGKFSFAIPEGHSEAGKKVEKTFDYTQVNTETEATEVITSKKWNLVTMVNDNLKANARSSAYQAALLPYKPSEVSAEDIQERMIRDFIRLGFSEDVARKQVLGMLATKAETVTVESV* |
| Ga0134122_1000009416 | F016408 | AGGA | MAVVESQVTALELERVVPKIRTLFERNDKFYANIKKCDVEVISQRQMRVPLELRPGGSFQYFDPNGGDLGRGGGPTWDKAVLTSVFVSENIEYTKLTQWATDNDRKAITNAVKRLTATALDELRRQLDSQLMQAGTGAVGTITTVATAAGVDTYTLTTDGFGARLVRFGQVVQVYDATLATLRGKGTITKWDVENATIDVTPAVAGAIATDILVTDGISSPASLPALFGVPYHHSNASTGTWLGFSRSTTPEIRSNRVNGGSSALTLPLPRLAINKIGNRVGIDNNFKPNAWLHPCQKQAYEDIGQAVIMIQKQAKDEGLDMYFDKMQFAGATDKPSFNWDKTRIDFVVDEVWGRGEILPIGFYTTDGRRIFEIRSSSGGVATADIFYMVCGMQTFVNNPAATAYIDALAVPAGY* |
| Ga0134122_1000009463 | F042960 | GGAG | MPIIQFSDRDVLRGEVVKPSWYRMRIDSVGEAPAKPSDKAPSTNYPIEGTILFNGDNGDTEFANTPIDWNFNSKAMGFAVGFLQSFGVEVKAGVRFDLKSAEGRELDVYVENDTYQGRIVNRVNHKYRPIKSEVTAMPSQSVPA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |