NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10020936

Scaffold Ga0136549_10020936


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10020936 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3916
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006545Metagenome / Metatranscriptome370Y
F012773Metagenome / Metatranscriptome277Y
F093836Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1002093610F006545GAGGVKVRDAAKIFEKYDRKTTEKMAEHNRGGGSVRKPVRSTKNASTADKYDRAKFIYRKAAQAITAGHPLKNDKGEPTPAALQFKRWAAKVPQNQDDLRELKALGARLKERYKPKNA*
Ga0136549_100209364F093836N/AVVQDELKNWSWWLAGYVGPPVQDKAASAEGNYVSEEIWEGQDAKYEPDALAAEKVEEIVRNLPSFSRVVLKAAYVQYAYHSEHSIAQRLRISTDRYKSELKKAHEMVARKLKND*
Ga0136549_100209365F012773N/AVKKEGVTVMIGLLGPGKEMGKEADSLLEDDMSECPLATQDEIVNKGNKQKAVLTASYGPAEDEKTCGNCEYGMKLKGCGLKKGEVFCDIFEFKCAESNVCDAWDSMEEEED*
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