NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10000423

Scaffold Ga0136549_10000423


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10000423 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30946
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (30.51%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F004106Metagenome453Y
F007505Metagenome350Y
F007971Metagenome / Metatranscriptome341Y
F038601Metagenome / Metatranscriptome165Y
F056571Metagenome137N
F097251Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1000042324F056571N/ALIFSSTLARSTAAEVNFRVDTIYGLLTEGQSRGQIVQFGSKQWNITPRQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI*
Ga0136549_1000042326F038601GAGMKLYSPDAKGKYVWQVADSKTRAVSYTVTTTRTPPLDACYGHPMGKYDDQGLYMTYCPNVGADDAKSPLAARYVVHPMAASERDKADTQRLWREI*
Ga0136549_1000042338F097251N/AMDPMIILTDSQVIELNNRIGQIQRLLESAQVIKAGGAAQPKAVTEQAQPQSVTSKRRKAKRKTRGALDAAKVVEIKRRLAAGGESAQKIANDYGVHVTTVNLIKYGKTWKNVQVPA*
Ga0136549_1000042353F002317N/AMEHHEEALITAKPPESPFNQMIPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDIETRVRNLEMTIGRYKQ*
Ga0136549_1000042354F007971N/AMAVKAKTGTGRLEHQAGRPKTTSQGYGQHSRPRRRGKKPYVGQGR*
Ga0136549_1000042356F007505N/AMSKLETLQSALTAREDEILGYQINIDNYTRAIDKINAAYADNSAMVEFRDRLAEMLEQHKTEQLKAIIIRDVIADQLTELEAS*
Ga0136549_100004239F004106N/AMRGDDALDPAYSIGADFVNSTDAQTGRWNRITILKNNSSFAAITAENYTGNSLVGESLPAGFELIGVFTAFTLNSSGAVVAYKI*
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