NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100008519

Scaffold Ga0136449_100008519


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100008519 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28941
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000228Metagenome / Metatranscriptome1519Y
F103615Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_10000851927F000036GAGGMTTKESFWMACDSIEQLRAEYGPFQTRAEAEVEARKLGFGFLLRYEHVIDANENIQEVRCIFIELPTAHPSPTGPVVRKLHTRCATCGETAVHEEHWLAEVWADIHEFEHTRHRVRLFEQSRREGLKEIGDWRDQCA*
Ga0136449_10000851928F103615AGGAMGKRREPRKEIKVPVRIFGTDSGGQIFSEKVFTGDVS
Ga0136449_1000085199F000228GAGMPRGRKPIPKDADLKLYLVPCSCGTTFAVSENYDRQGTAWSRYLKCPHCGKRHDPKNRLLQLGFQRDGYWKVDEC*
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