NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129324_10029609

Scaffold Ga0129324_10029609


Overview

Basic Information
Taxon OID3300010368 Open in IMG/M
Scaffold IDGa0129324_10029609 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2627
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.0754Long. (o)-76.1533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023961Metagenome / Metatranscriptome208Y
F037431Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0129324_100296091F037431AGGAMPTYKTDRPFTEAQLKAMDIIHDPDTRLFEDQNEESYTVDEFINDRECNQLRTYFKENFDKIGYNINNHVLHITYPMLIPEISDIVRHKVLEHFGDDVIFYSDVAQSDPISVGDQFFKSIKPYGLHTDAVTHLTGYRPFKDIIIPVELDSIPVSEYVTFNQRYRGRATHFMRGRDIGSFANYANVIRHQSYKDYGVENCEHNEKDQQILKDIMPAHIPMSIYEGLSIEKILPWRPKCAIIHDASVLHAPADYRKHGCEYKIGLTLHLMKRDAKYNNRLEGYY
Ga0129324_100296093F023961GGAMPNFIETNFPVKTNLLKSYMKDVWEDSNELYKEYMSWENNKFFVQVIKDFDIPLLREIKNIWNYLGIRPREWRCNFFRVLPGGELPLHVDVLSKCSVVIPMTEMTGNLYFEDGTEVLYQNMTVINTKVAHGVKAPTKERIVFHMGIHDTPYEEIKIGHNT*
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