NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126377_10002153

Scaffold Ga0126377_10002153


Overview

Basic Information
Taxon OID3300010362 Open in IMG/M
Scaffold IDGa0126377_10002153 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13431
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (47.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003059Metagenome / Metatranscriptome510Y
F010961Metagenome / Metatranscriptome297Y
F041300Metagenome / Metatranscriptome160Y
F047102Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0126377_1000215316F010961GGAGGMQRVTAMMAYVVSDGRLCALKPAEWSLLLLGITLCGVATLLFLALHA*
Ga0126377_1000215320F003059AGGGGGMKRGGIAAGLLAGAVIATTAMPGSAQVRDAVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVPEQGKGSVTGQDIELQGSWKSGNRQYEAKYGGAFVRRHADLKGTQTWTDGGKTFSRSCTGTIKRPFRVFLPGEKK*
Ga0126377_100021533F041300GGAMDPGRLLPLGAGEVSLAFFSAVDYRRYAAECVRLAQQVADPDDKARLLDMAETFRELADKNGSRHARLPEG*
Ga0126377_100021534F047102N/AMDTVTVSIAIPESRRCRQRARQCRSVAGHLRVQNAREQMLKAAAEYERMARDAEQREIAQGVSLLTALIVRQRPGQRAA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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