Scaffold Ga0126377_10000165

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126377_10000165

Scaffold Ga0126377_10000165

Overview

Basic Information
Taxon OID	3300010362 Open in IMG/M
Scaffold ID	Ga0126377_10000165 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_22
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	36570
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (73.81%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009235	Metagenome / Metatranscriptome	321	Y
F009423	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_1000016510	F009423	GGAG	MLGFHEAMGFAIVSGWALLLLWGAVLFVTRRDAGRLYWGLLTVLQVVLAVQLVAGVVLLFAGGRRPLLHYLYGAVFPAIVLGVAHWLTRGLTKPPYHALFTIASFFIFGLTLRALQTGLGMP*
Ga0126377_1000016540	F009235	AGGAGG	MADQRRTFRALGVVDGGTTAPPGAAAEALRAEFDRALTLKAGLQGEARSPVSPTGRRTTADAEAKLRTLVASVEGASRFAIRLGLLDPGQVRALWSEAIALGLFDGWDAGQSAYAPAQSPPSPEEPHGDLP*

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