NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116248_10001009

Scaffold Ga0116248_10001009


Overview

Basic Information
Taxon OID3300010351 Open in IMG/M
Scaffold IDGa0116248_10001009 Open in IMG/M
Source Dataset NameAD_USPNca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49277
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (65.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium ADurb.Bin133(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002296Metagenome / Metatranscriptome573Y
F045120Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0116248_100010091F045120N/AMNKNVIDFLLKEFKINTFSKLFETMFRLINKKIPKMKRIIGNHSSEYAVIDNTDDKRLDKYLRINEADYLQIKRWHSLYNEFGMASTVRDIILFFYNGVVKYGLEGFLELVGKELRID
Ga0116248_1000100919F002296N/AMKNKKHLFHFIVSESMNTTVIDFLLKEFKVNTFSELFETMFRLVNKKMPKMKRIIGNCRSEYAVIDSSDDKRLDKYLRISEANYLQIKRWHSLYNEFGMASTVRDIILFFYNGVMKYGLEEFLVIVGKKLKVDKLKNDFLGKMTQLLNITARKRLLYALVIENYPKYVYST*
Ga0116248_1000100941F002296N/ANVIDFLLKEFKINTFSELFETMFRLVDKKISKMKRIIGNCRSEYAVIDSSDDKRLDKYLRISEADYLRIKRWHSLYNEFGMASTVRDIILFFYNGVMKYGLEGFLELIGKKLRIDKLKNDFLDKMTQLLNIADQKQLLYALVIENYPKYVYYT*
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Institute for Fundamental Biomedical Research
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