Basic Information | |
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Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10030027 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3715 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012157 | Metagenome / Metatranscriptome | 283 | Y |
F014322 | Metagenome / Metatranscriptome | 264 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074046_100300272 | F014322 | AGGAG | MKIQDLSKELDTKTMKTVRGGDNGTSAASSILQAMGIDAPVAVGYGAGSAGNTFIHVDGNQSGSVSNNQTSGDKFAAFLGTLKGL* |
Ga0074046_100300273 | F012157 | AGGAG | MKIQDLSKELDTKTMKTVRGGDNGNSATNTIGQAMNLAVPVSVLSGGPSNSNVHVNGTQNAGISNVQFSGDSYLALFPFALTR* |
Ga0074046_100300274 | F012157 | AGGAG | MKIQDLSKELDTKTMKTVRGGDNGNSATNAIGQVMNLSAPVAVLSYGPSNTNVHVNGTQNAQIWNSQIGGDSFLALFPSAL* |
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