| Basic Information | |
|---|---|
| Taxon OID | 3300010339 Open in IMG/M |
| Scaffold ID | Ga0074046_10000047 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 99729 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (67.03%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001289 | Metagenome / Metatranscriptome | 730 | Y |
| F001567 | Metagenome / Metatranscriptome | 670 | Y |
| F002181 | Metagenome / Metatranscriptome | 586 | Y |
| F005245 | Metagenome / Metatranscriptome | 407 | Y |
| F022395 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074046_100000473 | F022395 | AGGA | MKVRSAKFILLVIAAYVGSGVALWAQAPPSQTDSANTNWTSTTDSRNGDADPIRTVESHSQSGNRNLDKQSVERRSDDGGFVPYQDIEKETVQVDADTVRTTTRTFTRDPDGAKQLVEVVEEERHTAGADSTVVRSTSDPDVNGNLQVIRRQTEQTTRTSPNVEEIKTMVQLPDVNGGLTAAVKVEERREQGANGAVESQKTTLLPDGAGNWQVGEIRRTTIAQEGDHRTTDEQVFLPDSEGKITEASRTITNATESGSGEKRNTVETYSIAIPGAVADGRLHLVERDITAQQTSATGQQVTQQQVQQANPGDPGSGLQVVTVTIDAVRPGASGAQATRTIQARDANGSFPVISVDTTKSDNIHAIQVQIAPSEAPKKDAK* |
| Ga0074046_1000004735 | F002181 | AGGAG | MADILKKDPELSSRLRKTNEELKNLQSSVKTGMINVKVLMDFRSATERARQASAAVQQWLDAQGKGGDPYKLMEQVVRQRVEMATQLIRDVTVDLESLDVDYDTPGLPELNQAVRKLAERLEKLFPR* |
| Ga0074046_1000004750 | F005245 | N/A | MLGGSLLAHSAQHSQKWESGSFDITITIELQQMHAKDLSTAVERLASVIGPKLALDRASFHINVKPAADKLDLQPSLCFPERVAA* |
| Ga0074046_1000004751 | F001567 | N/A | MERSLIWVEGDAKGWACSSCQWKFPVPTLLSGEEAKGAYDRLAAGKFREHKCWSGTSFPAGEQQTTLDAHTTFAERARMLVKRGNTPKVAVELVLHEMEFEHRNNSRMMEKARADAEDFLLKARKGLI* |
| Ga0074046_1000004779 | F001289 | GAGG | MKNPYEVLRIKEQELLRVRKEMEALRISARLLGAEDPGAAKAENQPKLPRVVEMP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |