NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134064_10097724

Scaffold Ga0134064_10097724


Overview

Basic Information
Taxon OID3300010325 Open in IMG/M
Scaffold IDGa0134064_10097724 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)963
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000472Metagenome / Metatranscriptome1100Y
F006381Metagenome / Metatranscriptome374Y
F008487Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0134064_100977241F000472AGGMAKTDEPVTQLATRIPKDLHRRLKLHCVTHEIAVQDFVVEAIEEKLGRKARLKK
Ga0134064_100977242F006381GGAGGMPQCGEIVVERLTGNRAMVIRVLSPEEVTCRFGDGRLEDRFTFELEPLLSLRDPRGGGRFVPLGSLVWLFFSGFVSRWLRQAAPASVTNRLRLVQPSDSSRSSLAV*
Ga0134064_100977243F008487AGGAGGMTVSEVGREGVRLVSQLTGVAISVPVVAGFVLLGAVVLVGRSLLDVGRKLLETKPRAREPLKAA*
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